GgaEX0000881 @ galGal4
Exon Skipping
Gene
ENSGALG00000000864 | FBXW2
Description
F-box/WD repeat-containing protein 2 [Source:RefSeq peptide;Acc:NP_001007843]
Coordinates
chr17:10375429-10379575:-
Coord C1 exon
chr17:10379489-10379575
Coord A exon
chr17:10378809-10378978
Coord C2 exon
chr17:10375429-10377329
Length
170 bp
Sequences
Splice sites
3' ss Seq
AAACTGTTTTCTAATTCTAGATT
3' ss Score
7.58
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GTAGTTTTGCAGAAGTGCAAAGTCAAATCTCTTATGCATAGTCCTGGGGATTATATTCTTTTAAGTGCAGATAAGTATGAAATCAAG
Seq A exon
ATTTGGCCTATTGGAAGGGAAATAAACTGCAAGTGTTTAAAAACACTGTCTGTTTCTGAAGATCGCAGCATCTCTCTACAGCCCAGATTGCACTTTGATGGTAAATACATAGTGTGCAGTTCAGCACTAGGATTATACCAGTGGGATTTTGCCAGCTATGATATTGTCAG
Seq C2 exon
GGTTATCAAGACTTCTGACTTCTCAAATGTGTCCTTGCTAGGCTTTGGAGAGATATTTGCTCTACTGTTTGATAATAGATACCTGTATATAATGGACGTGAGGACAGAAGAACTGATAAGCCGCTGGCCTCTACCAGAGTATAGAAAATCAAAGAGAGGGTCAAGTTTTTTGGCTGGTGAAATGTCTTGGTTAAATGGACTAAATGGTCAAAACGATACAGGCTTGGTTTTTGCCACCAGTATGCCAGACCACAGTATCCATTTGGTGTTATGGAAAGAACATGGCTGAAAAGATTACATATGCAGAATCTTCAGGATTATATGGACTATCAGCAATGTGTCCATCAAATGAAACTTTGCATGAACCAAAGTTGCACATCTAATGGTATCATCATGCAATGCACAATCACTTGATTTTATTTCGGCATTTGGGAACGGATTGGTTTTGACATAATACAACAGAGCATGCTAATAGTATTCACCATTAAATTTCTCTTTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000864_MULTIEX1-3/3=2-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTTATGCATAGTCCTGGGGA
R:
ACCAAGACATTTCACCAGCCA
Band lengths:
251-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]