RnoEX0035457 @ rn6
Exon Skipping
Gene
ENSRNOG00000018687 | Fbxw2
Description
F-box and WD repeat domain containing 2 [Source:RGD Symbol;Acc:1310460]
Coordinates
chr3:13871517-13877430:-
Coord C1 exon
chr3:13877344-13877430
Coord A exon
chr3:13876228-13876397
Coord C2 exon
chr3:13871517-13872179
Length
170 bp
Sequences
Splice sites
3' ss Seq
CCCCTCCCTTTTTTTTTTAGATT
3' ss Score
12.31
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
GTGGTTCTGCAGCAGTGCAAAGTCAAGTCTCTCTTGCACAGCCCTGGGGACTACATCCTTTTAAGTGCAGACAAGTACGAGATCAAG
Seq A exon
ATTTGGCCAATTGGGAGAGAAATCAACTGTAAGTGCTTAAAGACATTGTCTGTCTCTGAGGATAGAAGTATCTGCCTACAGCCAAGACTTCATTTTGATGGAAAATACATTGTCTGTAGTTCAGCCCTGGGTCTGTACCAGTGGGACTTTGCCAGTTATGATATCCTCAG
Seq C2 exon
GGTCATCAAGACACCTGAGGTAGCAAACTTGGCCTTGCTTGGCTTTGGAGATGTCTTCGCTCTGCTGTTTGACAACCACTACCTATACATCATGGACTTGAGGACAGAGAGCCTAATTAGCCGCTGGCCTCTGCCAGAGTACAGGAAATCAAAGAGAGGCTCCAGCTTCCTGGCAGGCGAAGCGTCCTGGCTGAATGGACTGGATGGGCACAATGACACGGGCTTAGTCTTTGCTACCAGCATGCCTGACCACAGTATTCACCTGGTTTTATGGAAGGAGCATGGCTGACACCAAGCGCTACCACCGCTGACTGACTTTGGGTGCCAGGGCTGCGGGTTTTGGGTGCAACATCTGTGGCAGCCAACTGCATGAACCAAAGTTCTCACCTAAAGGTATCATCACGCAGTGCACAATCATTTATCTGTTTGCCAGGGGCCAGGGCTGGGCGGGGAGGGCTTGTTTTACTGACATACACCGCAGCATGCTAATGGGACACACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018687-'15-19,'15-18,18-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCCCTGGGGACTACATC
R:
ATCCAGTCCATTCAGCCAGGA
Band lengths:
255-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]