MmuEX0018949 @ mm10
Exon Skipping
Gene
ENSMUSG00000035949 | Fbxw2
Description
F-box and WD-40 domain protein 2 [Source:MGI Symbol;Acc:MGI:1353435]
Coordinates
chr2:34804514-34808600:-
Coord C1 exon
chr2:34808514-34808600
Coord A exon
chr2:34807278-34807447
Coord C2 exon
chr2:34804514-34805999
Length
170 bp
Sequences
Splice sites
3' ss Seq
TCACCATCCCCCCTTTTTAGATT
3' ss Score
11.15
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
GTGGTTTTGCAGAAGTGCAAAGTCAAGTCTCTCTTGCACAGCCCTGGAGACTACATCCTCTTAAGTGCAGACAAATATGAGATCAAG
Seq A exon
ATTTGGCCAATTGGGAGAGAAATCAACTGTAAGTGCTTGAAGACACTGTCTGTCTCTGAGGATAGAAGTATCTGCCTGCAGCCAAGACTTCATTTTGATGGAAAATACATTGTCTGTAGTTCAGCCCTGGGTCTGTACCAGTGGGACTTTGCCAGTTATGATATTCTCAG
Seq C2 exon
GGTCATCAAGACACCTGAGGTAGCAAACTTGGCCTTGCTTGGCTTTGGAGATGTCTTCGCCCTGCTGTTTGACAACCACTACCTATATATCATGGACTTGAGGACAGAGAGCCTAATTAGCCGCTGGCCTCTGCCAGAGTACAGGAAATCAAAGAGAGGCTCCAGCTTCCTGGCAGGCGAAGCGTCCTGGTTGAATGGATTGGATGGGCACAATGACACGGGCTTAGTCTTTGCCACCAGCATGCCTGACCACAGTATTCACCTGGTGTTATGGAAGGAGCATTGCTGACACCAGGAGCTACCACCGCTGACTGACTTTGGGTGCCAGGGCTGCGGGTTTTGGGTGCAATGTCTATGGCAGCCAACTGCATGAACCAAAGTTCTCACCTAAAGGTATCATCACGCAGTGCACAATCATTTATCTGTTTGCCAGGGCTGGGGCGGGGAGGGCTTGTTTACTGACATACACCGCAGCATGCTAATGGGATACACCATTGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035949-'20-23,'20-22,22-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCCCTGGAGACTACATCC
R:
TCCATTCAACCAGGACGCTTC
Band lengths:
249-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types