HsaEX6062784 @ hg19
Exon Skipping
Gene
ENSG00000119402 | FBXW2
Description
F-box and WD repeat domain containing 2 [Source:HGNC Symbol;Acc:13608]
Coordinates
chr9:123526450-123535118:-
Coord C1 exon
chr9:123535032-123535118
Coord A exon
chr9:123533626-123533795
Coord C2 exon
chr9:123526450-123527125
Length
170 bp
Sequences
Splice sites
3' ss Seq
TCATTTTCTTTTTTCTGTAGATT
3' ss Score
10.82
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
GTAGTTTTGCAGAAGTGCAAAGTCAAGTCTCTCTTGCACAGTCCTGGAGACTACATCCTCTTAAGTGCAGACAAATATGAGATTAAG
Seq A exon
ATTTGGCCAATTGGGAGAGAAATCAACTGTAAGTGCTTAAAGACATTGTCTGTCTCTGAGGATAGAAGTATCTGCCTGCAGCCAAGACTTCATTTTGATGGCAAATACATTGTCTGTAGTTCAGCACTTGGTCTCTACCAGTGGGACTTTGCCAGTTATGATATTCTCAG
Seq C2 exon
GGTCATCAAGACTCCTGAGATAGCAAACTTGGCCTTGCTTGGCTTTGGAGATATCTTTGCCCTGCTGTTTGACAACCGCTACCTGTACATCATGGACTTGCGGACAGAGAGCCTGATTAGTCGCTGGCCTCTGCCAGAGTACAGGAAATCAAAGAGAGGCTCAAGCTTCCTGGCAGGCGAAGCATCCTGGCTGAATGGACTGGATGGGCACAATGACACGGGCTTGGTCTTTGCCACCAGCATGCCTGACCACAGTATTCACCTGGTGTTGTGGAAGGAGCACGGCTGACACCATGAGCCACCACCGCTGACTGACTTTGGGTGCCGGGGCTGCGGGTTTTGGGTGCAACCTCTGCGGCAGCCGACTGCATGAACCAAAGTTCTCACCTAATGGTATCATCACGCAGTGCACAATCATTTATCTATGTTTTGCCAGGGGCCAGGGCTCGGGGTGGGGGAGGGCTTGTTTTATTGACATACAACGCAGCATGCTAATGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119402-'11-10,'11-9,13-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=FE(59.6=100)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTTGCACAGTCCTGGAGA
R:
GTCCATTCAGCCAGGATGCTT
Band lengths:
258-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)