DreEX0033193 @ danRer10
Exon Skipping
Gene
ENSDARG00000020131 | fnbp1l
Description
formin binding protein 1-like [Source:ZFIN;Acc:ZDB-GENE-040801-155]
Coordinates
chr8:15024331-15028644:+
Coord C1 exon
chr8:15024331-15024459
Coord A exon
chr8:15025525-15025671
Coord C2 exon
chr8:15028441-15028644
Length
147 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTGTGCTCATGCAGAAT
3' ss Score
8.61
5' ss Seq
AGGGTATAT
5' ss Score
3.89
Exon sequences
Seq C1 exon
GCAAAGTCCCAGCTGTATCTGAGACAACACATGGCGGAGGAGAGCAAGAACGAGTACGCGGCCCAGTTGCAGAACTTTAATGGTGAACAGTGGAAACATTTCAACCAGGCCATCCCTCAGATATTCACT
Seq A exon
AATCTTCAGAACATGGATGAACGGCGAACTGTGAAACTCGGTGAGATGTACCGGAGTTTTGCTGAGGTTGAGCGAAGAGTCATTCCAATTGTCTCAAAATGCCTGGAAGGCATGGTTACTGCTGCTAAAAATGTGGACGAGCGAAGG
Seq C2 exon
GATTCTGGGATTGTAGTGGAGTCATTCAAGTCGGGTTTTGAACCCCCTGGTGATTTCCCTTTTGAAGACTTCAGTCAGAACATCCAGCGAACAGGGTCAGACAGCACCATTGGGACCCCCAAAACAGAGGGAGGCAAACCAGACCCCAAACACGCAATCAGCAGGACCAAAAACAAACTCTGGCTCTTTGGAAAGAAACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020131-'12-10,'12-9,14-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=0.112 C2=0.691
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF039618=DUF342=PU(3.4=5.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAGCAAGAACGAGTACGC
R:
CTGATTGCGTGTTTGGGGTCT
Band lengths:
252-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]