GgaEX1025314 @ galGal4
Exon Skipping
Gene
ENSGALG00000005850 | FNBP1L
Description
formin binding protein 1-like [Source:HGNC Symbol;Acc:HGNC:20851]
Coordinates
chr8:12825375-12828241:-
Coord C1 exon
chr8:12828113-12828241
Coord A exon
chr8:12826202-12826348
Coord C2 exon
chr8:12825375-12825578
Length
147 bp
Sequences
Splice sites
3' ss Seq
ATCTTCCTTTCTGCTTGCAGCAA
3' ss Score
10.2
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
GCAAAGCAACAGTTAAACCTGCGTACACATATGGCTGATGAAAACAAAAATGAATATGCTGCACAGCTACAGAATTTTAATGGTGAACAGCACAAACACTACTACATTGTCATTCCTCAGATTTACAAG
Seq A exon
CAACTTCAAGAAATGGATGAAAGAAGGACTATCAAACTTAGTGAATGTTACAAAGGCTTTGCTGACTCTGAGCGCAAGGTTATTCCAATCATCTCTAAATGCTTAGAGGGGATGATCCTTGCAGCAAAATCAGTTGATGAACATAGA
Seq C2 exon
GACTCCCAGCTAGTGATAGACTGCTTCAAATCTGGTTTTGAACCTCCTGGAGATTTTCCATTTGAAGACTACAGTCAGAATATTTACCGGACTATCTCTGATGGAACCATCAGTACACCAAAGCAGGAAGGAATGAGAATTGATTCAAAAACTACAGTGGGCAAGGCGAAAGGAAAGCTGTGGCTATTCGGAAAAAAGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005850-'15-23,'15-22,19-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.442 A=0.000 C2=0.235
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGCGTACACATATGGCTG
R:
CCTTCCTGCTTTGGTGTACTGA
Band lengths:
244-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]