MmuEX0019453 @ mm9
Exon Skipping
Gene
ENSMUSG00000039735 | Fnbp1l
Description
formin binding protein 1-like [Source:MGI Symbol;Acc:MGI:1925642]
Coordinates
chr3:122260821-122266857:-
Coord C1 exon
chr3:122266753-122266857
Coord A exon
chr3:122261938-122262084
Coord C2 exon
chr3:122260821-122261024
Length
147 bp
Sequences
Splice sites
3' ss Seq
TTTGAATTCTGGATTATTAGCAA
3' ss Score
-0.66
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
AGTAAAAAGAAGTTTGAAAGAGAATGTAGAGAAGCGGAGAAAGCACAGCAGAGTTATGAGAGGTTGGATAATGACACCAATGCCACCAAGGCAGATGTTGAAAAG
Seq A exon
CAACTACAAGAAATGGATGAACGAAGGACAATTAAACTCAGTGAATGTTACAGAGGGTTTGCAGACTCAGAACGCAAAGTTATTCCTATCATCTCAAAATGTTTAGAAGGAATGATTCTTGCAGCAAAATCAGTTGATGAAAGAAGA
Seq C2 exon
GATTCTCAAATGGTAGTAGACTCCTTCAAGTCTGGCTTTGAACCTCCAGGAGACTTTCCATTTGAAGATTACAGTCAGCACATTTACAGAACCATTTCTGACGGGACCATCAGTGCAGCCAAACAGGAGAGTGGCAAGATGGATTCCAAGTCCACAGTGGGGAAGGCCAAGGGCAAGCTGTGGCTCTTTGGAAAGAAGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039735_MULTIEX2-2/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=0.000 C2=0.279
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAAGCGGAGAAAGCACAG
R:
TTCCCCACTGTGGACTTGGAA
Band lengths:
242-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: