RnoEX0036527 @ rn6
Exon Skipping
Gene
ENSRNOG00000013798 | Fnbp1l
Description
formin binding protein 1-like [Source:RGD Symbol;Acc:1305386]
Coordinates
chr2:226707574-226710632:-
Coord C1 exon
chr2:226710504-226710632
Coord A exon
chr2:226708767-226708913
Coord C2 exon
chr2:226707574-226707777
Length
147 bp
Sequences
Splice sites
3' ss Seq
TTTGAATTCTGAATTATTAGCAA
3' ss Score
0.18
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
GCCAAGCAGCAGCTGAACCTCCGCACGCACATGGCTGACGAGAATAAAAACGAATACGCCGCGCAGCTGCAGAACTTCAACGGGGAGCAGCACAAGCATTTCTACGTGGTGATTCCTCAGATTTACAAG
Seq A exon
CAACTACAAGAAATGGATGAACGAAGGACAATTAAACTCAGTGAATGTTACAGAGGGTTTGCAGACTCAGAACGCAAAGTTATCCCCATCATCTCGAAATGTCTAGAAGGAATGATTCTTGCAGCAAAATCAGTTGATGAGAGAAGA
Seq C2 exon
GACTCTCAAATGGTAGTAGACTCGTTCAAGTCTGGCTTTGAACCCCCAGGAGACTTTCCATTTGAAGATTATAGTCAGCACATTTACAGGACCGTTTCTGATGGGACCATCAGTGCCTCCAAACAGGAGGGTGGCAAGATGGATTCCAAGTCCACAGCAGGGAAGGCCAAGGGCAAACTGTGGCTCTTTGGAAAGAAGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013798-'16-13,'16-12,17-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.512 A=0.000 C2=0.373
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCACATGGCTGACGAGAATA
R:
AATCCATCTTGCCACCCTCCT
Band lengths:
249-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]