DreEX0033402 @ danRer10
Exon Skipping
Gene
ENSDARG00000044809 | fpgs
Description
folylpolyglutamate synthase [Source:ZFIN;Acc:ZDB-GENE-040426-2781]
Coordinates
chr21:6020332-6023634:+
Coord C1 exon
chr21:6020332-6020434
Coord A exon
chr21:6020513-6020590
Coord C2 exon
chr21:6023490-6023634
Length
78 bp
Sequences
Splice sites
3' ss Seq
AGAGCATATGTTTATTTCAGCCT
3' ss Score
3.04
5' ss Seq
GGGGTGAGA
5' ss Score
4.74
Exon sequences
Seq C1 exon
GCGTCCTTGGGTGTGCGGTATCTCGTCTTTAGGTATCGATCACACTAGCATTCTGGGAGACACCATTGAGAAAATCGCCTGGCAGAAAGGAGGGATTTTTAAG
Seq A exon
CCTGGAGTTCCTGCGTTCACAGTCAAACAGCCTGACGGGCCGATGAAAGTGCTTCAGGAGAGAGCAGAAGAAGTTGGG
Seq C2 exon
TGCTCGCTGTCGGTGTGTCCAGATCTGGATGAGTACGAGAGCGAGGGTTCCCTCAGCTTGGGGTTAGCTGGTCAGCATCAGCGCAGCAACGCGTCTTTGGCTCTTCAGCTCTCACACACATGGCTGCAGAGACACATCCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044809_MULTIEX1-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.038 C2=0.020
Domain overlap (PFAM):
C1:
PF082457=Mur_ligase_M=FE(16.0=100)
A:
PF082457=Mur_ligase_M=FE(11.8=100)
C2:
PF082457=Mur_ligase_M=PD(17.5=75.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCGCCTGGCAGAAAGGAG
R:
GTGAGGATGTGTCTCTGCAGC
Band lengths:
175-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]