BtaEX6046297 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008994 | FPGS
Description
Bos taurus folylpolyglutamate synthase (FPGS), mRNA. [Source:RefSeq mRNA;Acc:NM_001024480]
Coordinates
chr11:98503530-98504379:+
Coord C1 exon
chr11:98503530-98503632
Coord A exon
chr11:98503947-98504024
Coord C2 exon
chr11:98504232-98504379
Length
78 bp
Sequences
Splice sites
3' ss Seq
ACTCTCCGTGTCCTCCACAGAGT
3' ss Score
11.09
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
GAAGCCTGTGGTGTGTGGGATCACCTCTCTTGGCATCGACCACACTGGCCTTCTGGGGGACACGATGGAGAAGATCGCATGGCAGAAAGGGGGCATTTTTAAG
Seq A exon
AGTGGCGTCCCTGCCTTCACCGTGCTCCAGCCTGACGAGCCGCTGGCGGTGCTAAGGGACAGGGCTCAGCAGATCTCA
Seq C2 exon
TGTCCCCTCTACCTGTGCCCACCACTACAAGCCCTGGAGGAAGGGGGGCCACCACTGACCCTGGGCCTGGAGGGAGAGCACCAGCGGTCCAATGCTGCCCTGGCCTTGCAGGTGGCCCGCTGCTGGCTGCAGCAGAAAGGTTACCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008994-'9-14,'9-13,10-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.160
Domain overlap (PFAM):
C1:
PF082457=Mur_ligase_M=FE(16.4=100)
A:
PF082457=Mur_ligase_M=FE(12.1=100)
C2:
PF082457=Mur_ligase_M=PD(18.4=76.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATCGCATGGCAGAAAGGG
R:
TAACCTTTCTGCTGCAGCCAG
Band lengths:
176-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]