RnoEX0036803 @ rn6
Exon Skipping
Gene
ENSRNOG00000050780 | Fpgs
Description
folylpolyglutamate synthase [Source:RGD Symbol;Acc:1587713]
Coordinates
chr3:11722401-11723175:-
Coord C1 exon
chr3:11723073-11723175
Coord A exon
chr3:11722788-11722865
Coord C2 exon
chr3:11722401-11722548
Length
78 bp
Sequences
Splice sites
3' ss Seq
TCTCCCTGGTGTGCCTGCAGCCT
3' ss Score
8.67
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
AAAGCCAGTGGTGTGTGGAGTCTCCTCTCTTGGCATTGACCACACCAGTCTGCTAGGAGATACAGTGGAGAAAATAGCATGGCAGAAAGGGGGCATCTTTAAG
Seq A exon
CCTGGTGTCCCTGCCTTCACTGTGCTACAGCCAGAAGGTCCCCTGGCCGTGCTGAGGGATAGAGCCCAGCAGATCTCA
Seq C2 exon
TGCCCCCTGTACCTGTGTCCACCATTGGAAGCCCTGGAGCAGGTTGGATTGCCATTGAGCCTGGGCCTGGAGGGAGAGCACCAGCGGCATAATGCAGCCTTGGCCTTGCAGCTGGCCCGTTGTTGGCTGGAGCAGCAGAACTACCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050780-'4-7,'4-6,5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGCATTGACCACACCAGTC
R:
CATTATGCCGCTGGTGCTCTC
Band lengths:
168-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]