GgaEX7009738 @ galGal4
Exon Skipping
Gene
ENSGALG00000005051 | FPGS
Description
folylpolyglutamate synthase [Source:HGNC Symbol;Acc:HGNC:3824]
Coordinates
chr17:4893985-4894464:-
Coord C1 exon
chr17:4894362-4894464
Coord A exon
chr17:4894218-4894295
Coord C2 exon
chr17:4893985-4894137
Length
78 bp
Sequences
Splice sites
3' ss Seq
CAACCGCCCGTCTCCCGCAGCCC
3' ss Score
9.17
5' ss Seq
GGGGTGAGC
5' ss Score
5.97
Exon sequences
Seq C1 exon
GGCGCCCGTGGTGTGCGGCGTCTCCTCGTTGGGCATCGACCACACCAGCATCCTGGGGGACACGGTGGAGAAGATCGCTTGGCAGAAGGGGGGCATTTTTAAG
Seq A exon
CCCGGCGTGCCGGCGTTCACTGTGCCGCAGCCCGAACAACCGCTGGAAGTGCTCCGGGACCGAGCGCGGGAGTGTGGG
Seq C2 exon
TGCCCGCTGTACCTGTGCCCCGAGCTGGATGCCTTTGAGGCGGGGACGCGGGTGCTGGAGCTGGGGCTGGCGGGCAGCCACCAGCGCTCCAATGCTGCTCTGGCTCTGCAGCTCTCACGGACGTGGCTGCAGCGGCGCGGTTATGAGGGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005051-'5-8,'5-6,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGACCACACCAGCATCC
R:
GAGCCAGAGCAGCATTGGAG
Band lengths:
176-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]