DreEX0033403 @ danRer10
Exon Skipping
Gene
ENSDARG00000044809 | fpgs
Description
folylpolyglutamate synthase [Source:ZFIN;Acc:ZDB-GENE-040426-2781]
Coordinates
chr21:6020513-6026365:+
Coord C1 exon
chr21:6020513-6020590
Coord A exon
chr21:6023490-6023634
Coord C2 exon
chr21:6026290-6026365
Length
145 bp
Sequences
Splice sites
3' ss Seq
TTGTTCTCTCTGTTTCTCAGTGC
3' ss Score
9.72
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
CCTGGAGTTCCTGCGTTCACAGTCAAACAGCCTGACGGGCCGATGAAAGTGCTTCAGGAGAGAGCAGAAGAAGTTGGG
Seq A exon
TGCTCGCTGTCGGTGTGTCCAGATCTGGATGAGTACGAGAGCGAGGGTTCCCTCAGCTTGGGGTTAGCTGGTCAGCATCAGCGCAGCAACGCGTCTTTGGCTCTTCAGCTCTCACACACATGGCTGCAGAGACACATCCTCACAG
Seq C2 exon
AGGTTCAGTGCTGAGGGTTCTCTTATTCAACGCTACAGGAGAGAGAGACTGTGCCGCCATGCTCAAACTGCTGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044809_MULTIEX1-2/4=1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=0.020 C2=0.000
Domain overlap (PFAM):
C1:
PF082457=Mur_ligase_M=FE(11.8=100)
A:
PF082457=Mur_ligase_M=PD(17.5=75.5)
C2:
PF0287516=Mur_ligase_C=FE(28.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGAGTTCCTGCGTTCAC
R:
TGCCAGCAGTTTGAGCATGG
Band lengths:
154-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]