RnoEX6016470 @ rn6
Exon Skipping
Gene
ENSRNOG00000050780 | Fpgs
Description
folylpolyglutamate synthase [Source:RGD Symbol;Acc:1587713]
Coordinates
chr3:11722232-11722865:-
Coord C1 exon
chr3:11722788-11722865
Coord A exon
chr3:11722401-11722548
Coord C2 exon
chr3:11722232-11722321
Length
148 bp
Sequences
Splice sites
3' ss Seq
TCTTGCCCTTTTCCCCACAGTGC
3' ss Score
12.07
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
CCTGGTGTCCCTGCCTTCACTGTGCTACAGCCAGAAGGTCCCCTGGCCGTGCTGAGGGATAGAGCCCAGCAGATCTCA
Seq A exon
TGCCCCCTGTACCTGTGTCCACCATTGGAAGCCCTGGAGCAGGTTGGATTGCCATTGAGCCTGGGCCTGGAGGGAGAGCACCAGCGGCATAATGCAGCCTTGGCCTTGCAGCTGGCCCGTTGTTGGCTGGAGCAGCAGAACTACCATG
Seq C2 exon
ACATCCAGGAGCTGAAGGCATCCAAGCCAAGCATTCGGTGGCAGCTGCCGCTGGCACCTGTGTTCCGCCCCACGCCCCACATGAGACGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050780-'5-9,'5-7,6-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.065
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCTGCCTTCACTGTGCTA
R:
CACGTCTCATGTGGGGCG
Band lengths:
162-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]