MmuEX7000867 @ mm10
Exon Skipping
Gene
ENSMUSG00000009566 | Fpgs
Description
folylpolyglutamyl synthetase [Source:MGI Symbol;Acc:MGI:95576]
Coordinates
chr2:32686554-32687222:-
Coord C1 exon
chr2:32687145-32687222
Coord A exon
chr2:32686738-32686885
Coord C2 exon
chr2:32686554-32686643
Length
148 bp
Sequences
Splice sites
3' ss Seq
CTCTCCCCCTCCCCCCACAGTGC
3' ss Score
12.33
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
CCTGGTGTCCCTGCCTTCACTGTGGTGCAGCCAGAAGGTCCCCTGGCTGTGCTGAGGGATCGAGCCCAGCAGATTGGA
Seq A exon
TGCCCGTTGTACCTGTGTCCGCCATTGGAAGCCCTGGAGGAGGTTGGACTGCCATTGAGCCTGGGTCTGGAGGGAGCACACCAGCGGTCTAATGCTGCCTTGGCCTTGCAGCTGGCCCACTGTTGGCTGGAGCGGCAGGACCACCAAG
Seq C2 exon
ACATCCAGGAGCTGAAGGTATCCAGGCCAAGCATACGGTGGCAGCTGCCCCTGGCACCTGTGTTCCGCCCTACCCCTCACATGAGGCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009566-'21-28,'21-26,24-28=AN
Average complexity
A_S
Mappability confidence:
90%=100=80%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082457=Mur_ligase_M=FE(11.7=100)
A:
PF082457=Mur_ligase_M=PD(17.8=76.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGTCCCTGCCTTCACT
R:
CTCATGTGAGGGGTAGGGCG
Band lengths:
162-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types