DreEX0034170 @ danRer10
Exon Skipping
Gene
ENSDARG00000099227 | galnt13
Description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 [Source:ZFIN;Acc:ZDB-GENE-091204-444]
Coordinates
chr9:4572924-4599396:-
Coord C1 exon
chr9:4599262-4599396
Coord A exon
chr9:4598148-4598177
Coord C2 exon
chr9:4572924-4573797
Length
30 bp
Sequences
Splice sites
3' ss Seq
TCTTTGTGTACATGTCTTAGTAT
3' ss Score
3.72
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTATTTTCATACACTGCTGACAAAGAAATCCGTACGGATGACCTGTGTCTGGATGCATCACGACTGAATGGACCTGTTGTTATGCTGAAGTGCCACCACATGAAGGGAAACCAGATGTTTGAATATGATGCAGAG
Seq A exon
TATGTTGGCAAATGGGAGTATGACTTTAAG
Seq C2 exon
CGTCTGACTCTGCTCCATGTGAACAGTAACCAGTGTCTGGACATGCCTTCTGAAGAGGATAAGATGGTTCCCACTCTCAAAGACTGTAGCGGCAGGCGCTCACAGCAGTGGATCTTGAGGAACATGACGCTAGGCGTCTGACAGTGCCGGAAAACATCCAGAGTTGATACACACTACACAACACAAGACTTGGAGTCAGGTTTTTGGCTTTCCTCACAGCTCTGTGAACTGTCATTTTCTAGTCCATGATCTTGTTAAGCCAGGCTTTGATCAGAAGAGCCACACACACAGGCCATTTGTGGCCAGATGTGCTTTAAGTGCTTTTTGTCTCTGATCCAAGCATATGTGGCTGACTGACTGAGTATCTTTGCTACTCACACTCTCCTCTTTTTTTGACAGTAGCTCACGTGTATCTTCAGAGATGGAGTGTTAGCCTCTGCTGAAGTACATTCATCTCTGGGCTGAATTCACAGTGCTGGGTTCTTCACAGCGCCTGGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099227_MULTIEX1-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0065217=Ricin_B_lectin=FE(33.8=100)
A:
PF0065217=Ricin_B_lectin=FE(6.9=100)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGATGACCTGTGTCTGGAT
R:
CACATGGAGCAGAGTCAGACG
Band lengths:
123-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]