MmuEX1010853 @ mm10
Exon Skipping
Gene
ENSMUSG00000060988 | Galnt13
Description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 [Source:MGI Symbol;Acc:MGI:2139447]
Coordinates
chr2:55098563-55108199:+
Coord C1 exon
chr2:55098563-55098697
Coord A exon
chr2:55104066-55104095
Coord C2 exon
chr2:55108099-55108199
Length
30 bp
Sequences
Splice sites
3' ss Seq
CTTTTATTTGCCCTTATCAGAAA
3' ss Score
7.61
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GTGTTTTCTTATACTGCTGACAAAGAAATCCGAACTGACGACTTGTGCCTGGATGTATCCAGACTCAGTGGCCCTGTAATCATGCTAAAATGCCACCACATGAGAGGAAATCAGCTGTGGGAATATGACGCTGAG
Seq A exon
AAAGCAGGTAAATGGGAGTATAATTTTAAG
Seq C2 exon
ACCCACACTCTTGTTCACATAATCACGCAGTCCTGCCTCTCAATGGGCAAAGGAGAGGATGGCTCTCAAGATCTTTCCATGGAGACTTGTAATGATAGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060988-'27-29,'27-28,28-29
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0065217=Ricin_B_lectin=FE(37.0=100)
A:
PF0065217=Ricin_B_lectin=FE(7.1=100)
C2:
NA
Main Inclusion Isoform:
ENSMUST00000112634fB10351
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGGCCCTGTAATCATGCT
R:
CTCCTTTGCCCATTGAGAGGC
Band lengths:
125-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types