HsaEX1015180 @ hg38
Exon Skipping
Gene
ENSG00000144278 | GALNT13
Description
polypeptide N-acetylgalactosaminyltransferase 13 [Source:HGNC Symbol;Acc:HGNC:23242]
Coordinates
chr2:154438592-154453849:+
Coord C1 exon
chr2:154438592-154438726
Coord A exon
chr2:154443043-154443072
Coord C2 exon
chr2:154450411-154453849
Length
30 bp
Sequences
Splice sites
3' ss Seq
CTTTTATTTACCTTTATTAGAGA
3' ss Score
5.71
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GTATTTTCTTACACTGCTGACAAAGAAATCCGAACCGATGACTTGTGCTTGGATGTTTCTAGACTCAATGGACCTGTAATCATGTTAAAATGCCACCATATGAGAGGAAATCAGTTATGGGAATATGATGCTGAG
Seq A exon
AGAGCAGGTAAATGGGATTATAATTTCAAG
Seq C2 exon
AGACTCACGTTGCGACATGTTAACAGTAACCAATGTCTCGATGAACCTTCTGAAGAAGACAAAATGGTGCCTACAATGCAGGACTGTAGTGGAAGCAGATCCCAACAGTGGCTGCTAAGGAACATGACCTTGGGCACATGAAGATCATGTCCTCCAAGCCATGAAAGTGTCTACGCTTTTGTTTTTCCATTATTTCAATTGGGGGAAAATATTAACTTTGCTGAATTGAAAGTTTTAAAAATCCTTTTAGTATTCTAAAACACAATTGTTTCTAATTCGTTTCTAGAAATGTTTGCTTATTTCCCTACTAAAATTTGTATCTGATCAAAGCACATAAGAATATAAATAATAGCAAACTACTATTAAACAACAGAACAACTTGTAAAACAAATTGTGTTTGCTTTAAGAAAAATGTTTATTGCACTCATGTCATAGGGTTAATTGGAGGTTATTTTATTTTTGGTTGTCATGGTGATTGAAAGAGATAATGTAAATGCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144278_MULTIEX2-2/3=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.006 A=0.000 C2=0.284
Domain overlap (PFAM):
C1:
PF0065217=Ricin_B_lectin=PU(53.0=97.8)
A:
PF0065217=Ricin_B_lectin=FE(7.0=100)
C2:
PF0065217=Ricin_B_lectin=PD(30.3=76.6)
Main Inclusion Isoform:
ENST00000392825fB16110
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCGATGACTTGTGCTTGGA
R:
TGTTAACATGTCGCAACGTGA
Band lengths:
128-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains