RnoEX0037599 @ rn6
Exon Skipping
Gene
ENSRNOG00000005335 | Galnt13
Description
polypeptide N-acetylgalactosaminyltransferase 13 [Source:RGD Symbol;Acc:735044]
Coordinates
chr3:40610793-40624530:+
Coord C1 exon
chr3:40610793-40610927
Coord A exon
chr3:40615705-40615734
Coord C2 exon
chr3:40623975-40624530
Length
30 bp
Sequences
Splice sites
3' ss Seq
TTTTTATTTGCTCTTATCAGAAA
3' ss Score
7.92
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GTGTTTTCTTACACTGCTGACAAAGAAATCCGAACTGATGACTTGTGCCTGGATGTATCCAGACTCAGTGGGCCTGTAATCATGTTAAAATGCCACCACATGAGAGGGAATCAGCTGTGGGAGTATGATGCTGAG
Seq A exon
AAAGCAGGTAAATGGGAATATAATTTTAAG
Seq C2 exon
AGACTCACTTTGAGACATGCTAACAGTAACCAATGTCTTGATGAACCTTCTGAAGAAGACAAAATGGTGCCTACCATGCAAGACTGCAGTGGCAGCAGATCTCAACAATGGCTGCTGAGGAACATGACCTTGGGGACATGAAGATCTTTTTTCCCAAGATGTGAAAGTCTCTACTCATTTGTTTGTCCATTATTTCAGTTTGGTGAAAATCTTAACTTTGCTGAATTAAACGTTTTAAAAATACTTTTAGTAATATAAAACACAGTTGTTTATAATTCATTTTTAGGAATGTTTATTTCCCTACTAAAAATTTGTATCTGATTGAAGAAGCACATAAAATATAAATAATAAGAAACTGTTATTAAACATTTCAATTGTTTGGGAAAAAAAACACCTTGTATTTACTTTTAAAATGTCTTCATTAGCCTCTTGTCACAAGGTTACTTGGTATTGATTTATTTGGTGTTCTAATAACAATTAAAAGAGAGATCATGTAATGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005335_MULTIEX1-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.370
Domain overlap (PFAM):
C1:
PF0065217=Ricin_B_lectin=FE(37.0=100)
A:
PF0065217=Ricin_B_lectin=FE(7.0=100)
C2:
PF0065217=Ricin_B_lectin=PD(30.3=76.6)
Main Inclusion Isoform:
ENSRNOT00000048804fB5835
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGGGAATCAGCTGTGGGA
R:
CAGTCTTGCATGGTAGGCACC
Band lengths:
120-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]