DreEX0035955 @ danRer10
Exon Skipping
Gene
ENSDARG00000000588 | grasp
Description
GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein [Source:ZFIN;Acc:ZDB-GENE-060312-30]
Coordinates
chr23:32276852-32280219:-
Coord C1 exon
chr23:32280126-32280219
Coord A exon
chr23:32278794-32278860
Coord C2 exon
chr23:32276852-32276918
Length
67 bp
Sequences
Splice sites
3' ss Seq
GCTTTTGTTCCTGTGTTTAGGCT
3' ss Score
9.18
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTGACACGATTGCCAGCGTGAACGACACTTCAGTTGACGGATTTCGCCATAAAGAAATCGTCCAGCTCATTAAATCATCAGGAAACAACATTAG
Seq A exon
GCTAGAAACCGTCTACAGCGACTCTATAAGAAAAGCAGAACTGGAAGCTCGTCTGCAGTATCTAAAG
Seq C2 exon
CAAACCCTGCATGAGAAATGGGATGAGTACAGGTCTCTGATGGTACAAGAGCAGCGGCTCGTGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000588-'5-6,'5-5,6-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0059519=PDZ=FE(35.6=100)
A:
PF0059519=PDZ=PD(4.6=17.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACACGATTGCCAGCGT
R:
CCGCTGCTCTTGTACCATCAG
Band lengths:
151-218
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]