GgaEX1018588 @ galGal4
Exon Skipping
Gene
ENSGALG00000012545 | CYTIP
Description
cytohesin 1 interacting protein [Source:HGNC Symbol;Acc:HGNC:9506]
Coordinates
chr7:35718050-35720405:-
Coord C1 exon
chr7:35720312-35720405
Coord A exon
chr7:35719933-35720002
Coord C2 exon
chr7:35718050-35718116
Length
70 bp
Sequences
Splice sites
3' ss Seq
AAAGCCCCTCTTCTTTCCAGGCT
3' ss Score
6.57
5' ss Seq
AAGGTAACG
5' ss Score
10.19
Exon sequences
Seq C1 exon
GTGATATTCTTGCCAATGTCAATGGAGTGAACACTGATGGTTTTAGTCACAAGCAGATTGTAGACTTGATAAAGTCTTCAGGGAACTATTTAAG
Seq A exon
GCTGGAGACTGTCAACGGGGCTCTGTTCCTGAGGAAGATGGAGCTGGAGACCAAGCTGCAGCTGCTGAAG
Seq C2 exon
CAAACTCTGCAGCAGAAGTGGGTGGAGTTGCGCTCCCTGCACTTACAGGAACAGCGTTTGCTGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012545-'7-7,'7-6,8-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0059519=PDZ=FE(36.0=100)
A:
PF0059519=PDZ=PD(4.7=16.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCTTGCCAATGTCAATGGAGTG
R:
AGCAAACGCTGTTCCTGTAAGT
Band lengths:
151-221
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]