DreEX6034966 @ danRer10
Exon Skipping
Gene
ENSDARG00000061717 | CABZ01075242.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E7F4K6]
Coordinates
chr9:5325494-5328002:+
Coord C1 exon
chr9:5325494-5325587
Coord A exon
chr9:5326920-5326986
Coord C2 exon
chr9:5327936-5328002
Length
67 bp
Sequences
Splice sites
3' ss Seq
TTGTGTATGTTTGTATATAGGTT
3' ss Score
8.19
5' ss Seq
AAGGTATAT
5' ss Score
7.84
Exon sequences
Seq C1 exon
GTGACATCATATTGTCAGTAAATGGTGTGAGCATTGAGGGTTCCACACACCAGAACATTATCGAGTTGATTCGAGAATCCTCTAACACGCTGAA
Seq A exon
GTTGGAAACAGTCAGTGGGAGTGTCATGAAGAGGATTGAATTAGAGAAAAAGATGCACTATCTTAAG
Seq C2 exon
CAAACTCTTCGTGAGAAATGGGTGGAACTGCAATCTCTCACACTCAAAGAAAAACGCCTTACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061717-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0059519=PDZ=FE(35.6=100)
A:
PF0059519=PDZ=PD(4.6=17.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATCATATTGTCAGTAAATGGTGT
R:
CTTGAGTAAGGCGTTTTTCTTTGAGT
Band lengths:
159-226
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]