RnoEX0026078 @ rn6
Exon Skipping
Gene
ENSRNOG00000004772 | Cytip
Description
cytohesin 1 interacting protein [Source:RGD Symbol;Acc:1307990]
Coordinates
chr3:44156395-44166113:-
Coord C1 exon
chr3:44166020-44166113
Coord A exon
chr3:44163184-44163253
Coord C2 exon
chr3:44156395-44156461
Length
70 bp
Sequences
Splice sites
3' ss Seq
TTTCCCTTCTCTTCAAACAGGAT
3' ss Score
12.44
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GTGACATCTTTGCAAATGTCAATGGCGTGAGCACAGAAGGCTTCACTCACAAACAAGTGGTTGACCTGATCCGATCTTCGGGAAATCTGCTAAC
Seq A exon
GATAGAGACTCTTAATGGGACAATGATTCACAGAAGAGCAGAACTTGAGGCAAAGCTGCAGACTTTAAAG
Seq C2 exon
CAAACCTTGAAGAAAAAATGGGTGGAGCTCAGGTCTCTGCACTTACAGGAACAGCGCCTGCTGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004772-'13-8,'13-7,15-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.043
Domain overlap (PFAM):
C1:
PF0059519=PDZ=FE(35.6=100)
A:
PF0059519=PDZ=PD(4.6=16.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCTTTGCAAATGTCAATGGCG
R:
CAGGCGCTGTTCCTGTAAGTG
Band lengths:
151-221
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]