MmuEX6101407 @ mm10
Exon Skipping
Gene
ENSMUSG00000026832 | Cytip
Description
cytohesin 1 interacting protein [Source:MGI Symbol;Acc:MGI:2183535]
Coordinates
chr2:58137859-58147968:-
Coord C1 exon
chr2:58147875-58147968
Coord A exon
chr2:58145137-58145206
Coord C2 exon
chr2:58137859-58137925
Length
70 bp
Sequences
Splice sites
3' ss Seq
TTTCCCTTCTCTTCAAACAGGAT
3' ss Score
12.44
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
GTGACATCTTTGCAAATGTCAATGGTGTGAGCACAGAAGGCTTTACTCACAAACAAGTGGTTGACCTGATCCGATCATCAGGAAATCTGCTAAC
Seq A exon
GATAGAGACTCTTAATGGAACAATGATTCACAGAAGAGCAGAACTTGAAGCAAAACTGCAGACTTTAAAG
Seq C2 exon
CAAACCTTGAAGAAAAAATGGGTGGAGCTCAGGTCTCTGCACTTACAGGAACAGCGCCTGTTGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026832-'13-20,'13-16,16-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.130
Domain overlap (PFAM):
C1:
PF0059519=PDZ=FE(35.6=100)
A:
PF0059519=PDZ=PD(4.6=16.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCTTTGCAAATGTCAATGGTGT
R:
CAGGCGCTGTTCCTGTAAGTG
Band lengths:
151-221
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types