BtaEX6009693 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008329 | CYTIP
Description
Bos taurus cytohesin 1 interacting protein (CYTIP), mRNA. [Source:RefSeq mRNA;Acc:NM_001102243]
Coordinates
chr2:38695339-38707036:+
Coord C1 exon
chr2:38695339-38695432
Coord A exon
chr2:38698227-38698296
Coord C2 exon
chr2:38706970-38707036
Length
70 bp
Sequences
Splice sites
3' ss Seq
CCTTTTTTTTCTTAAAACAGGAT
3' ss Score
9.14
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GTGATGTCCTTGCAAAAATCAATGGTGTGAGCACAGAAGGCTTTACCCACAAACAAGTTGTTGACCTGATCAGATCTTCAGGAAACCTGTTAAC
Seq A exon
GATAGAGACTCTTAATGGAACAATGATTCTCAAAAGAACAGAGCTTGAGGCAAAGCTGCAAGTTTTAAAG
Seq C2 exon
CAAACCTTAAAGAAGAAATGGGTGGAGTTCAGATCTCTGCAGTTACAGGAACAGCGCCTGCTTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008329-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0059519=PDZ=FE(35.6=100),PF081196=Toxin_31=PD(3.1=3.1)
A:
PF0059519=PDZ=PD(4.6=16.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCCTTGCAAAAATCAATGGTGT
R:
CAGGCGCTGTTCCTGTAACTG
Band lengths:
151-221
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]