MmuEX6056604 @ mm9
Exon Skipping
Gene
ENSMUSG00000000531 | Grasp
Description
GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein [Source:MGI Symbol;Acc:MGI:1860303]
Coordinates
chr15:101060965-101061482:+
Coord C1 exon
chr15:101060965-101061058
Coord A exon
chr15:101061156-101061222
Coord C2 exon
chr15:101061416-101061482
Length
67 bp
Sequences
Splice sites
3' ss Seq
TGTCCCCCTCTATCCCCCAGGCT
3' ss Score
10.67
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
Exon sequences
Seq C1 exon
GGGACACTATTGCCAGCGTCAACGGTCTCAACGTGGAAGGCATCCGGCACCGGGAGATTGTCGATATCATCAAGGCGTCTGGCAACGTTCTCAG
Seq A exon
GCTGGAAACTCTGTACGGGACGTCCATTCGGAAGGCAGAACTGGAGGCGCGCCTGCAGTACCTTAAG
Seq C2 exon
CAAACCCTGTACGAGAAGTGGGGAGAATACAGGTCACTTATGGTACAGGAGCAGCGGCTAGTACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000531-'5-5,'5-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0059519=PDZ=FE(35.6=100)
A:
PF0059519=PDZ=PD(4.6=17.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACACTATTGCCAGCGTC
R:
CCGCTGCTCCTGTACCATAAG
Band lengths:
151-218
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: