HsaEX6066601 @ hg19
Exon Skipping
Gene
ENSG00000161835 | GRASP
Description
GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein [Source:HGNC Symbol;Acc:18707]
Coordinates
chr12:52407471-52407985:+
Coord C1 exon
chr12:52407471-52407564
Coord A exon
chr12:52407661-52407727
Coord C2 exon
chr12:52407919-52407985
Length
67 bp
Sequences
Splice sites
3' ss Seq
CTTTGATTCTCCAACCTCAGACT
3' ss Score
5.7
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
GGGACACCATCGCCAGCGTCAATGGCCTGAATGTGGAAGGCATCCGGCATCGAGAGATTGTGGACATCATTAAGGCGTCAGGCAATGTTCTCAG
Seq A exon
ACTGGAAACTCTATATGGGACATCAATTCGGAAGGCAGAACTGGAGGCTCGTCTGCAGTACCTGAAG
Seq C2 exon
CAAACCCTGTATGAGAAGTGGGGAGAGTACAGGTCCCTAATGGTGCAGGAGCAGCGGCTGGTGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000161835-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0059519=PDZ=FE(35.6=100)
A:
PF0059519=PDZ=PD(10.5=17.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATCGCCAGCGTCAATG
R:
CTGCTCCTGCACCATTAGGGA
Band lengths:
143-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)