DreEX0036389 @ danRer10
Exon Skipping
Gene
ENSDARG00000045481 | gsap
Description
gamma-secretase activating protein [Source:ZFIN;Acc:ZDB-GENE-041210-216]
Coordinates
chr4:20490334-20491884:-
Coord C1 exon
chr4:20491804-20491884
Coord A exon
chr4:20490969-20491103
Coord C2 exon
chr4:20490334-20490392
Length
135 bp
Sequences
Splice sites
3' ss Seq
TTGGCTCTGGTGGATCAAAGGCT
3' ss Score
2.01
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
GAGCTTCCTGTGGCTCTGACGGCAATCTCTGGTGTGAAATGCACCCCTGAACTGCTCTGTCAACCAATAATCAAAGGGAAG
Seq A exon
GCTAAAAGCCTGCAAGGTTACTGGGAAGAGCTTCAGCATGTTTTGGACAGGATGAGGTATTTCGAGGCGGTACCATGTCCACGCTTCAGGACCAGTCTGATTAAAGAGGACTGGACTAAACTTCAGGCTGCTATG
Seq C2 exon
AACTCGGAGAAGAAGAAATCCCCCCGCAGTCATCACTACATTGAAGAGAACACCAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045481-'13-15,'13-14,14-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTCCTGTGGCTCTGACG
R:
TTTTGGTGTTCTCTTCAATGTAGTGA
Band lengths:
138-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]