GgaEX6000471 @ galGal3
Exon Skipping
Gene
ENSGALG00000008312 | PION
Description
NA
Coordinates
chr1:13670602-13675172:+
Coord C1 exon
chr1:13670602-13670655
Coord A exon
chr1:13674571-13674696
Coord C2 exon
chr1:13675093-13675172
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTCCCTACAATACTTTGCAGATG
3' ss Score
7.12
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GTTATCCCTGGAGTAGCATGTGCAACAGACATTATTTCTCTACCTGTGTTAGAG
Seq A exon
ATGCAAAACTCTAAAGGCTTCTGGGAGAAACTCGACTCAAACTTGGAGAGTGTGAAGTATGCAGAGCCACACTTGCATTACCACAATAATGTGCTCAGGAGGGAATGGCGTAATCTCTCAGAAGAG
Seq C2 exon
GATTTTTATTTATTTATAAAACAGACAGAAGAGAGAAGAGCCACAGCATATTTAAGGAATATATTTGAAAACGCCAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008312-'20-23,'20-22,22-23=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF042697=DUF440=PU(16.5=35.7)
C2:
PF042697=DUF440=FE(28.6=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTATCCCTGGAGTAGCATGTGC
R:
ATTCCTTAAATATGCTGTGGCTCT
Band lengths:
114-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]