MmuEX6016081 @ mm9
Exon Skipping
Gene
ENSMUSG00000039934 | Pion
Description
pigeon homolog (Drosophila) [Source:MGI Symbol;Acc:MGI:2442259]
Coordinates
chr5:20763688-20776432:+
Coord C1 exon
chr5:20763688-20763741
Coord A exon
chr5:20775720-20775848
Coord C2 exon
chr5:20776374-20776432
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTGTCTCCAGGTC
3' ss Score
13
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GAAATTCCCGGAATAAAGTTTACGACAGAGGAACTCCCATTGCCTCTTATGAAG
Seq A exon
GTCTACGGCTTGAAGGGGTACTGGGCAAAGCTGAACTCCAACCTTGAGTACATTAAGTATACAAAACCTCACTTGCACTATCACAACAGCGTCGTGAGGAGGGAATGGCATAACCTGATCTCTGAAGAG
Seq C2 exon
AGAACGGGCAAAAGGAGATCCACAATGTACGTGAGGAACATTCTTGAAAACGCAATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039934-'21-21,'21-20,22-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCGGAATAAAGTTTACGACAGA
R:
TCATTGCGTTTTCAAGAATGTTCCT
Band lengths:
107-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: