GgaEX6000471 @ galGal4
Exon Skipping
Gene
ENSGALG00000008312 | GSAP
Description
gamma-secretase activating protein [Source:HGNC Symbol;Acc:HGNC:28042]
Coordinates
chr1:12515115-12519685:+
Coord C1 exon
chr1:12515115-12515168
Coord A exon
chr1:12519084-12519209
Coord C2 exon
chr1:12519630-12519685
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTCCCTACAATACTTTGCAGATG
3' ss Score
7.12
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GTTATCCCTGGAGTAGCATGTGCAACAGACATTATTTCTCTACCTGTGTTAGAG
Seq A exon
ATGCAAAACTCTAAAGGCTTCTGGGAGAAACTCGACTCAAACTTGGAGAGTGTGAAGTATGCAGAGCCACACTTGCATTACCACAATAATGTGCTCAGGAGGGAATGGCGTAATCTCTCAGAAGAG
Seq C2 exon
ACAGAAGAGAGAAGAGCCACAGCATATTTAAGGAATATATTTGAAAACGCCAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008312-'35-34,'35-33,40-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTATCCCTGGAGTAGCATGTGC
R:
ATTCCTTAAATATGCTGTGGCTCT
Band lengths:
90-216
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]