DreEX0036729 @ danRer10
Exon Skipping
Gene
ENSDARG00000063126 | gusb
Description
glucuronidase, beta [Source:ZFIN;Acc:ZDB-GENE-070705-256]
Coordinates
chr5:1829686-1835488:-
Coord C1 exon
chr5:1835307-1835488
Coord A exon
chr5:1833970-1834112
Coord C2 exon
chr5:1829686-1829873
Length
143 bp
Sequences
Splice sites
3' ss Seq
TTTCTGTCTTCTCCTCTTAGATA
3' ss Score
11.18
5' ss Seq
TCGGTAAGA
5' ss Score
10.53
Exon sequences
Seq C1 exon
TGGGTGAACGGGGTCCAGATGACTGAACATGCGGGCGGTCATCTGCCATTCGAGGCGGACATCAGCAGCGTTCTGCGTCAGAGCTCTGGAGGTCCGTGTCGAATCACCATAGCAGTGAACAACACTTTATCTCTGGAAACACTTCCACCAGGAACCATCCAGTACATGAACGACCGCACAAG
Seq A exon
ATATCCTTCTGGCTACTTCGTTCAGAACACTAACTTTGATTTCTTCAACTATGCTGGAATACATCGCTCCGTCCTGCTGTACACGACACCCGCGGTGCACATTGATGACATCACAGTCCAGACGACATTCTCCGATAACATCG
Seq C2 exon
GACTGGTCAGTTATAATGTGTCAGTGTTGGGCGGCTCTAAGGCGGCTGTGAAAGTGACGCTCTCAGCGAAGGACGGCAGATGCGTGGCCTCGTCTGAAGGCCTCAGTGGAGTCCTCAAAATCACAGACGTCAACCTGTGGTGGCCTTACCTGATGCACGAGAACCCCGGATACCTGTACTCCATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063126-'3-3,'3-2,4-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0283713=Glyco_hydro_2_N=FE(31.7=100)
A:
PF0283713=Glyco_hydro_2_N=PD(15.9=61.2),PF0070316=Glyco_hydro_2=PU(16.2=32.7)
C2:
PF0070316=Glyco_hydro_2=FE(62.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGGGGTCCAGATGACTGAA
R:
GCTGAGAGCGTCACTTTCACA
Band lengths:
243-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]