MmuEX6021304 @ mm9
Exon Skipping
Gene
ENSMUSG00000025534 | Gusb
Description
glucuronidase, beta [Source:MGI Symbol;Acc:MGI:95872]
Coordinates
chr5:130475211-130476412:-
Coord C1 exon
chr5:130476231-130476412
Coord A exon
chr5:130475797-130475939
Coord C2 exon
chr5:130475211-130475398
Length
143 bp
Sequences
Splice sites
3' ss Seq
CCTTTGTTTTCCCACCCTAGGTA
3' ss Score
11.2
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
Exon sequences
Seq C1 exon
TGGGTGAATGGGATTCATGTGGTGGAACATGAGGGAGGTCACCTCCCCTTTGAGGCTGACATTAGCAAGCTGGTCCAGAGTGGGCCCCTGACCACCTGCCGGATCACGATTGCCATCAACAACACACTGACCCCTCATACCCTTCCGCCGGGGACCATCGTCTACAAGACTGACACCTCCAT
Seq A exon
GTATCCCAAGGGTTACTTTGTCCAGGACACAAGCTTTGACTTCTTCAACTATGCGGGACTGCATCGATCTGTGGTCCTCTATACCACCCCTACCACTTACATCGATGATATCACTGTGATCACTAATGTGGAGCAAGACATCG
Seq C2 exon
GGCTGGTGACCTACTGGATTTCTGTGCAGGGCAGTGAACATTTCCAGCTAGAAGTGCAACTTTTGGATGAGGGTGGCAAAGTCGTGGCCCATGGGACAGGGAACCAGGGTCAACTTCAGGTTCCCAGTGCCAACCTCTGGTGGCCTTACCTGATGCATGAGCATCCAGCCTACATGTACTCCTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025534-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.022 C2=0.016
Domain overlap (PFAM):
C1:
PF0283713=Glyco_hydro_2_N=FE(31.7=100)
A:
PF0283713=Glyco_hydro_2_N=PD(15.9=61.2),PF0070316=Glyco_hydro_2=PU(16.2=32.7)
C2:
PF0070316=Glyco_hydro_2=FE(62.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGACATTAGCAAGCTGGT
R:
TGAAGTTGACCCTGGTTCCCT
Band lengths:
247-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: