RnoEX6064107 @ rn6
Exon Skipping
Gene
ENSRNOG00000000913 | Gusb
Description
glucuronidase, beta [Source:RGD Symbol;Acc:2772]
Coordinates
chr12:30204580-30205906:+
Coord C1 exon
chr12:30204580-30204761
Coord A exon
chr12:30205184-30205326
Coord C2 exon
chr12:30205719-30205906
Length
143 bp
Sequences
Splice sites
3' ss Seq
TCTTTGTTTTCCCATCCTAGGTA
3' ss Score
10.61
5' ss Seq
TTGGTGAGG
5' ss Score
6.9
Exon sequences
Seq C1 exon
TGGGTGAATGGGATTCATGTGGTGGAACATGAGGGAGGTCACCTCCCCTTTGAGGCTGACATCACCAAGCTGGTCCAGAGTGGGCCCCTGACCACCTTCCGGGTCACCATCGCCATCAACAACACACTGACCCCTTATACCCTTCCACCGGGGACCATTGTCTACAAGACTGATCCTTCCAT
Seq A exon
GTATCCCAAGGGTTACTTCGTCCAGGACATAAGCTTCGACTTCTTCAACTATGCGGGGCTGCACCGGTCTGTGGTCCTGTACACCACCCCTACCACCTATATCGATGATATCACTGTGACCACTGACGTGGACCGGGACGTTG
Seq C2 exon
GGCTGGTGAACTACTGGATTTCTGTCCAGGGCAGTGACCATTTCCAGCTAGAAGTGCGTCTTCTGGATGAGGATGGCAAAATTGTGGCCCGTGGAACAGGGAATGAGGGTCAACTTAAGGTGCCGCGTGCCCACCTCTGGTGGCCTTACCTGATGCATGAGCATCCAGCCTACCTGTACTCCTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000913-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
PF0283713=Glyco_hydro_2_N=FE(31.7=100)
A:
PF0283713=Glyco_hydro_2_N=PD(15.9=61.2),PF0070316=Glyco_hydro_2=PU(16.2=32.7)
C2:
PF0070316=Glyco_hydro_2=FE(62.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAGGCTGACATCACCAAGC
R:
CGGCACCTTAAGTTGACCCTC
Band lengths:
258-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]