GgaEX0003204 @ galGal4
Exon Skipping
Gene
ENSGALG00000002542 | GUSB
Description
beta-glucuronidase precursor [Source:RefSeq peptide;Acc:NP_001034405]
Coordinates
chr19:4928198-4929720:-
Coord C1 exon
chr19:4929539-4929720
Coord A exon
chr19:4928900-4929042
Coord C2 exon
chr19:4928198-4928385
Length
143 bp
Sequences
Splice sites
3' ss Seq
TTCCTGTCTTGCTCACTCAGGTA
3' ss Score
9.41
5' ss Seq
TTGGTAGGT
5' ss Score
7.03
Exon sequences
Seq C1 exon
TGGGTGAATGGAGTGCAAGTTGTGGAGCATGAAGGCGGCCACCTCCCTTTTGAAGCAGATATAAGCAGGATTGTCCAGCGCAGCCCAGGGGTTCTCTGCCGCATCACTGTTGCGCTGAACAACACTCTGACGCCGCACACTCTGCCTCCGGGGTCAATTCAGTACATGAATGACAGAACAAG
Seq A exon
GTATCCCAAGAACTATTTTGTACAGAACACCAGGTTTGATTTCTTTAATTATGCTGGAATCCATCGCCCGGTTGTGCTTTACACCACACCTTCTGTCTACATAGATGATATTACTGTGACAACTACTTCATCAGAGAGCGTTG
Seq C2 exon
CAATGGTGCGATATCAGATATCGGTAGTTGGCAGCGAACTCTATTCCTTGTCTCTGAGTTTACGTGACCAAGAAGGGAAAGTGGTTGCTACAGGCGATGGGCCATCTGGAGAGCTAAAAGTGCCAAATCCAAACCTGTGGTGGCCTTATCTGATGCACGAGAACCCTGGATACCGCTACTTCTTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002542_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=0.000 C2=0.095
Domain overlap (PFAM):
C1:
PF0283713=Glyco_hydro_2_N=FE(31.6=100)
A:
PF0283713=Glyco_hydro_2_N=PD(15.8=61.2),PF0070316=Glyco_hydro_2=PU(15.7=32.7)
C2:
PF0070316=Glyco_hydro_2=FE(60.8=100)
Main Skipping Isoform:
ENSGALT00000004011fB343
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCGCTGAACAACACTCTGA
R:
TAGCGGTATCCAGGGTTCTCG
Band lengths:
251-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]