DreEX0037290 @ danRer10
Exon Skipping
Gene
ENSDARG00000030560 | helz
Description
helicase with zinc finger [Source:ZFIN;Acc:ZDB-GENE-040426-2419]
Coordinates
chr3:60729822-60733345:+
Coord C1 exon
chr3:60729822-60730028
Coord A exon
chr3:60732619-60732655
Coord C2 exon
chr3:60733221-60733345
Length
37 bp
Sequences
Splice sites
3' ss Seq
TTGTCTGTTTGTCTGAACAGAAG
3' ss Score
8.41
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
ACACTCTGTCCCAGAGTCATGGAGGACAGGAGGCCACAGAAGTCATGTGACGAGGCCATTGGATCATTAGTGAGGCAGGAGTATGAGGCGGCGGTGGCCCACAGCACAGAGGCCCTGCTGGCCATGGGGCCCCGGACCCCGACCCCCAGCACTGCCCTCCTGCGCACGCGAGCCCTGCTTTACCGCATAGCAGCACGACTACAGCTG
Seq A exon
AAGGACTACGATCAGGCTGATGAAGACTGCAAGCATG
Seq C2 exon
TGTTTGCTGAGGAGCTGGCCAAGGGAGATGGCAGTTTCAGGGCAGGGCTTCAGAGTCTGCTGCTGGACGGAAGCTTGCAGGAAGTGTGCAGCGTTCTCTCTAAGGCGCTCTACGGAGAACCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000030560-'3-4,'3-2,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCGCATAGCAGCACGACTA
R:
AGAGAGAACGCTGCACACTTC
Band lengths:
128-165
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]