BtaEX6091279 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004746 | HELZ
Description
helicase with zinc finger [Source:HGNC Symbol;Acc:HGNC:16878]
Coordinates
chr19:63867297-63886721:-
Coord C1 exon
chr19:63886494-63886721
Coord A exon
chr19:63883706-63883742
Coord C2 exon
chr19:63867297-63867421
Length
37 bp
Sequences
Splice sites
3' ss Seq
TTGTGTCTTTTATTTTGCAGAAA
3' ss Score
11.31
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
GATTTTTGTCCCTGAGTCATGGAAGACAGAAGAGCTGAGAAGTCATGTGAACAAGCATGTGAATCACTGAAGAGGCAGGACTATGAGATGGCCCTCCAGCACTGCACAGAGGCCCTCCTTTCTCTTGGCCAGTACTCCATGGCCGACTTTACGGGGCCCTGTCCGCTGGAGATAGAGAGCATCAAGATCGAGAGTCTTCTTTATAGAATTGCCTCCTTTTTGCAGCTG
Seq A exon
AAAAACTATGGGCAAGCTGATGAAGATTGTAGGCATG
Seq C2 exon
TGCTGGGAGAAGGACTGGCCAAGGGAGATGGCGCCTTTCAGGCAGTGCTTTGCTGCATGCAGCTTAAAGGAAAGCTCCAGCCTGTATCCCACATTCTTGCCAAGTCACTGACAGGAGAGTCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004746-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCGCTGGAGATAGAGAGCA
R:
CAGCAAAGCACTGCCTGAAAG
Band lengths:
123-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]