MmuEX0022720 @ mm10
Exon Skipping
Gene
ENSMUSG00000020721 | Helz
Description
helicase with zinc finger domain [Source:MGI Symbol;Acc:MGI:1925705]
Coordinates
chr11:107549346-107592830:+
Coord C1 exon
chr11:107549346-107549401
Coord A exon
chr11:107577863-107577899
Coord C2 exon
chr11:107592706-107592830
Length
37 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTTTTCTTTTTGTAGAAA
3' ss Score
11.04
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
GAACTGGATGAAGTAATTGATCACTAATGAACTACAGAGCCGGTGAGATGTGCAAG
Seq A exon
AAAAACTACGGGCAAGCTGATGAAGATTGTAGGCATG
Seq C2 exon
TGCTGGGGGAAGGACTGGCCAAGGGAGAGCGTGCCTTCCGGGCAGTGCTGTGCTGCATGCAGCTGAAAGGGAAGCTCCAGCTTGTGTCCTCCATCCTTGCCAAGTCACTGTCAGGGGAGTCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020721_MULTIEX2-4/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACAGAGCCGGTGAGATGT
R:
GGCAAGGATGGAGGACACAAG
Band lengths:
127-164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types