RnoEX0041495 @ rn6
Exon Skipping
Gene
ENSRNOG00000003213 | Helz
Description
helicase with zinc finger [Source:RGD Symbol;Acc:1307049]
Coordinates
chr10:95794683-95814995:+
Coord C1 exon
chr10:95794683-95794910
Coord A exon
chr10:95797784-95797820
Coord C2 exon
chr10:95814871-95814995
Length
37 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTTTTCTTTTTGTAGAAA
3' ss Score
11.04
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
GATTTTTGTCCCTGAGTCATGGAAGACAGAAGAGCTGAAAGGTCATGTGAACAAGCGTGCGCGTCACTGCAGAGGCAGGACTATGACATGGCCCTCCAGCATTGCACAGACGCCCTGCTCTCTCTTGGCCAGTACTCCATGACAGACTTCGCAGGGCCGTGCCCAGTGGAGATTGAGCGCATCAAAATCGAGAGTCTTCTGTACAGAATTGCCTCATTCTTGCAGTTG
Seq A exon
AAAAACTACGGGCAAGCTGATGAAGATTGTAGGCATG
Seq C2 exon
TGCTGGGGGAAGGACTGGCCAAGGGAGAGAGCGCCTTCCGGGCAGTGCTGTGCTGCATGCAGCTGAAGGGGAAGCTCCAGCCTGTGTCCTCCATCCTTGCCCAGTCACTGTCAGGGGAGTCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003213-'4-9,'4-5,5-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(80.5=94.3)
A:
PF134141=TPR_11=FE(14.6=100)
C2:
PF134141=TPR_11=PD(2.4=4.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCATGACAGACTTCGCAGG
R:
CTCTCCCTTGGCCAGTCCTTC
Band lengths:
123-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]