GgaEX0026416 @ galGal3
Exon Skipping
Gene
ENSGALG00000021439 | HELZ
Description
NA
Coordinates
chr18:7158315-7179029:+
Coord C1 exon
chr18:7158315-7158415
Coord A exon
chr18:7175827-7175863
Coord C2 exon
chr18:7178905-7179029
Length
37 bp
Sequences
Splice sites
3' ss Seq
TTTCGTGTTTTACCTTTCAGAAA
3' ss Score
11
5' ss Seq
ATGGTATGG
5' ss Score
6.63
Exon sequences
Seq C1 exon
GCTGCCCGCCGGGCCGGGAGGAGGGCGGGGGAGGGCTTTCCCACAATGCTTTGTGGGGACGTTGACAAGTGGATCCAAGATGGCGTAGAAAGTAATGACAG
Seq A exon
AAAAAGTATGGGCAAGCAGATGAAGACTGTAGGCATG
Seq C2 exon
TGCTGGGAGAGGGGCTGGCCAAGGGAGATGGATCTTTCCGTGCAGTGCTCTGCTGCATGCATCTTAAAGGGAAGCTGCAAATTGTGTCTAATGTTCTTTCCAAATCACTGATGGGTGAATCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021439-'0-3,'0-2,4-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF134141=TPR_11=FE(16.2=100)
C2:
PF134141=TPR_11=PD(2.7=4.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTGGATCCAAGATGGCGT
R:
AGACACAATTTGCAGCTTCCCT
Band lengths:
125-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]