GgaEX0026415 @ galGal3
Exon Skipping
Gene
ENSGALG00000021439 | HELZ
Description
NA
Coordinates
chr18:7158315-7175863:+
Coord C1 exon
chr18:7158315-7158415
Coord A exon
chr18:7173869-7174096
Coord C2 exon
chr18:7175827-7175863
Length
228 bp
Sequences
Splice sites
3' ss Seq
CCCCTCTGCCCCCACTCTAGGAT
3' ss Score
10
5' ss Seq
CTTGTGAGT
5' ss Score
7.15
Exon sequences
Seq C1 exon
GCTGCCCGCCGGGCCGGGAGGAGGGCGGGGGAGGGCTTTCCCACAATGCTTTGTGGGGACGTTGACAAGTGGATCCAAGATGGCGTAGAAAGTAATGACAG
Seq A exon
GATTTCTGTCCCTGAGTCATGGCAGACAGAAGACCAGAGAAGTCATGTGAACAAGCATGTGAATCCCTTAAGCAGCAGGATTATGAAGTGGCAGTGAAGCATTGCACAGAGGCACTCCTTTCCCTCAGCCAGTACCCCCCAGCTCACCTCCCGGAGGCATGCCAGGCAGAAATCGACCGCATCAAAATCGAGACTCTGCTGTATAGAATTGCTTCCTTTTTACAACTT
Seq C2 exon
AAAAAGTATGGGCAAGCAGATGAAGACTGTAGGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021439-'0-2,'0-0,2-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF134141=TPR_11=PU(78.4=98.3)
C2:
PF134141=TPR_11=FE(16.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]