HsaEX6024316 @ hg19
Exon Skipping
Gene
ENSG00000198265 | HELZ
Description
helicase with zinc finger [Source:HGNC Symbol;Acc:16878]
Coordinates
chr17:65212015-65235605:-
Coord C1 exon
chr17:65235549-65235605
Coord A exon
chr17:65214711-65214938
Coord C2 exon
chr17:65212015-65212051
Length
228 bp
Sequences
Splice sites
3' ss Seq
TTCTTTCTCCCTGTCTGTAGGAT
3' ss Score
11.77
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
AAATTATAAAGAGCTCTGATGGGCTATTTGGGTGATACCCAGTGCAGTGAACTGCAG
Seq A exon
GATTTTTGTCCCTGAGTCATGGAAGACAGAAGAGCTGAAAAGTCATGTGAACAAGCATGTGAATCACTTAAGAGGCAGGACTATGAAATGGCCCTCAAGCACTGCACAGAGGCCCTTCTTTCTCTTGGCCAGTACTCCATGGCAGACTTCACAGGGCCTTGTCCATTGGAAATAGAACGCATCAAAATCGAGAGTCTTCTCTACAGAATTGCCTCATTTTTGCAACTG
Seq C2 exon
AAAAATTATGTGCAAGCTGATGAAGATTGTAGACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198265-'2-5,'2-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF134141=TPR_11=PU(80.5=94.3)
C2:
PF134141=TPR_11=FE(14.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)