BtaEX6091278 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004746 | HELZ
Description
helicase with zinc finger [Source:HGNC Symbol;Acc:HGNC:16878]
Coordinates
chr19:63883706-63902220:-
Coord C1 exon
chr19:63902164-63902220
Coord A exon
chr19:63886494-63886721
Coord C2 exon
chr19:63883706-63883742
Length
228 bp
Sequences
Splice sites
3' ss Seq
TTCTTTCTCCATGTCTTTAGGAT
3' ss Score
10.65
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
AAATTATAAAGAGCTCTGATGGGCTATTTGGGTAATACCCAGTGCAGTGAACTGCAG
Seq A exon
GATTTTTGTCCCTGAGTCATGGAAGACAGAAGAGCTGAGAAGTCATGTGAACAAGCATGTGAATCACTGAAGAGGCAGGACTATGAGATGGCCCTCCAGCACTGCACAGAGGCCCTCCTTTCTCTTGGCCAGTACTCCATGGCCGACTTTACGGGGCCCTGTCCGCTGGAGATAGAGAGCATCAAGATCGAGAGTCTTCTTTATAGAATTGCCTCCTTTTTGCAGCTG
Seq C2 exon
AAAAACTATGGGCAAGCTGATGAAGATTGTAGGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004746-'2-5,'2-4,6-5=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]