DreEX0037277 @ danRer10
Exon Skipping
Gene
ENSDARG00000030560 | helz
Description
helicase with zinc finger [Source:ZFIN;Acc:ZDB-GENE-040426-2419]
Coordinates
chr3:60724924-60732655:+
Coord C1 exon
chr3:60724924-60724947
Coord A exon
chr3:60729822-60730028
Coord C2 exon
chr3:60732619-60732655
Length
207 bp
Sequences
Splice sites
3' ss Seq
CTTTGCATCTCTCCTAACAGACA
3' ss Score
10.41
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
AGATGGCGTAGAAAGTAAAGCTAG
Seq A exon
ACACTCTGTCCCAGAGTCATGGAGGACAGGAGGCCACAGAAGTCATGTGACGAGGCCATTGGATCATTAGTGAGGCAGGAGTATGAGGCGGCGGTGGCCCACAGCACAGAGGCCCTGCTGGCCATGGGGCCCCGGACCCCGACCCCCAGCACTGCCCTCCTGCGCACGCGAGCCCTGCTTTACCGCATAGCAGCACGACTACAGCTG
Seq C2 exon
AAGGACTACGATCAGGCTGATGAAGACTGCAAGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000030560-'0-2,'0-0,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.222 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]