RnoEX0041508 @ rn6
Exon Skipping
Gene
ENSRNOG00000003213 | Helz
Description
helicase with zinc finger [Source:RGD Symbol;Acc:1307049]
Coordinates
chr10:95775366-95814995:+
Coord C1 exon
chr10:95775366-95775422
Coord A exon
chr10:95794683-95794910
Coord C2 exon
chr10:95814871-95814995
Length
228 bp
Sequences
Splice sites
3' ss Seq
CATTCTTTTCTCATGTTTAGGAT
3' ss Score
11.11
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
AAATTATAAAGAGCTCTGATGGGCGATTTGGGTGATACGCAGTGCAGTGAACTGCAG
Seq A exon
GATTTTTGTCCCTGAGTCATGGAAGACAGAAGAGCTGAAAGGTCATGTGAACAAGCGTGCGCGTCACTGCAGAGGCAGGACTATGACATGGCCCTCCAGCATTGCACAGACGCCCTGCTCTCTCTTGGCCAGTACTCCATGACAGACTTCGCAGGGCCGTGCCCAGTGGAGATTGAGCGCATCAAAATCGAGAGTCTTCTGTACAGAATTGCCTCATTCTTGCAGTTG
Seq C2 exon
TGCTGGGGGAAGGACTGGCCAAGGGAGAGAGCGCCTTCCGGGCAGTGCTGTGCTGCATGCAGCTGAAGGGGAAGCTCCAGCCTGTGTCCTCCATCCTTGCCCAGTCACTGTCAGGGGAGTCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003213_MULTIEX1-3/5=2-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF134141=TPR_11=PU(80.5=94.3)
C2:
PF134141=TPR_11=PD(2.4=4.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTATAAAGAGCTCTGATGGGCGA
R:
CAGAGACTCCCCTGACAGTGA
Band lengths:
180-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]