MmuEX0022719 @ mm9
Exon Skipping
Gene
ENSMUSG00000020721 | Helz
Description
helicase with zinc finger domain [Source:MGI Symbol;Acc:MGI:1925705]
Coordinates
chr11:107410660-107454144:+
Coord C1 exon
chr11:107410660-107410715
Coord A exon
chr11:107436252-107436479
Coord C2 exon
chr11:107454020-107454144
Length
228 bp
Sequences
Splice sites
3' ss Seq
CATTCTTTTCTCGTGTTTAGGAT
3' ss Score
12.12
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GAACTGGATGAAGTAATTGATCACTAATGAACTACAGAGCCGGTGAGATGTGCAAG
Seq A exon
GATTTTTGTCCCTGAGTCATGGAAGACAGAAGAGCTGAAAGGTCATGTGAACAAGCGTGCGCGTCACTGCAGAGGCAGGACTATGACATGGCCCTCCAGCACTGCACCGACGCCCTGCTCTCTCTTGGCCAGTACTCCATGGCAGACTTCACAGGGCCGTGCCCGGTGGAGGTTGAGCGCATCAAAATTGAGAGTCTTCTTTACAGAATTGCCTCATTCTTGCAATTG
Seq C2 exon
TGCTGGGGGAAGGACTGGCCAAGGGAGAGCGTGCCTTCCGGGCAGTGCTGTGCTGCATGCAGCTGAAAGGGAAGCTCCAGCTTGTGTCCTCCATCCTTGCCAAGTCACTGTCAGGGGAGTCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020721_MULTIEX1-2/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTGGATGAAGTAATTGATCACT
R:
AGAGACTCCCCTGACAGTGAC
Band lengths:
180-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: