DreEX0037673 @ danRer10
Exon Skipping
Gene
ENSDARG00000037154 | hivep3b
Description
human immunodeficiency virus type I enhancer binding protein 3b [Source:ZFIN;Acc:ZDB-GENE-100922-42]
Coordinates
chr16:34377305-34384507:-
Coord C1 exon
chr16:34384156-34384507
Coord A exon
chr16:34383860-34384005
Coord C2 exon
chr16:34377305-34377480
Length
146 bp
Sequences
Splice sites
3' ss Seq
CCTCTCTGTCTGGAGTGTAGGTA
3' ss Score
3.19
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
GGAGGAGGAAAGGGAAGAGGCAGAACACCGGTATGCTCCAAGGGTAGCTAGTCCAGTGAGAATCGTGGATCCTTCATATCCTAGTTTGCATACAACAACATCTGTCAGTTGGTGCTACCTAAATTATACAAAGCCCAACCCATCTACACATAGAGATTCAACATCAGTCTATTCCTCATGGAGTGTTAGCATGCATAACCCCAATATACCTGGTTTGTCCACCAAAATATTACTATCTCTGTTGCGCTCAAAACAAAAACATAGTGCTGAAACATACACAATGGCTACAGCTCCACCACCAACCATTGACAAGCTGGTTTCTACAGACAGCAAGGAGACCAGTGCATCAGAG
Seq A exon
GTACATGCCTCACCACCCAGCACCCCCGTCAAAGTAAAAGAGGAACCAACAAGTGAAAGTAGGGACAAAGATAAGGAGAGTGCTGATGACATGCCAGCTACCTCGACTCAAAATGAGGCAGTACGTGTTTGCATTTTTGAGGGCGG
Seq C2 exon
GTATAAGTCAAACGAGGATTATGTGTATGTTCGTGGAAGGGGAAGAGGCAAGTACGTGTGTGGTGAATGTGGGATTCGCTGTAAGAAGCCCAGCATGTTAAAAAAGCACATTCGCACTCATACAGATCTGCGTCCGTATGTCTGCAAGTACTGCAACTTCGCCTTTAAAACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037154-'1-5,'1-3,3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.602 A=0.776 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=43.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCATGGAGTGTTAGCATGCA
R:
TTCACCACACACGTACTTGCC
Band lengths:
246-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]