RnoEX6023117 @ rn6
Exon Skipping
Gene
ENSRNOG00000009341 | Hivep3
Description
human immunodeficiency virus type I enhancer binding protein 3 [Source:RGD Symbol;Acc:1311252]
Coordinates
chr5:139037816-139062632:+
Coord C1 exon
chr5:139037816-139043309
Coord A exon
chr5:139047350-139047483
Coord C2 exon
chr5:139062457-139062632
Length
134 bp
Sequences
Splice sites
3' ss Seq
TGTCCTCCTGATGAGTTCAGGTG
3' ss Score
3.3
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
CCCATGGGACAGCCCCAGGCTCAGAAGCTTTGAAAGAATATGCCCAACCATCTAGCAAAGCTCACCGAAGATGTCTGCCTCCACTGAGTGTAAAGAAAGAAGATCCAAAGGAACAGACTGACCTCCCTCCCCTAGCACCTCCTAGTTCTCTGCCTCTGTCAGATACTTCCCCTAGACCAGCCAAATTGCAAGAAGGTACAGACTCAAAGAAGGTACTGCAGTTCCCCAGCCTCCACACGACCACTAATGTCAGTTGGTGCTATTTAAACTACATTAAGCCAAATCACATCCAGCATGCAGATAGGAGGTCCTCTGTTTACGCTGGTTGGTGCATAAGTTTGTACAACCCCAACCTTCCAGGGGTTTCCACTAAAGCTGCTTTGTCCCTCCTGAGATCTAAGCAGAAGGTGAGCAAAGAGACATATACCATGGCCACAGCTCCACATCCTGAGGCAGGAAGGCTGGTTCCATCCAACTCCCGAAAGCCCCGCATGACAGAG
Seq A exon
GTGCACCTCCCGTCGATGGTTTCCCTGGAGAGCCAGAAAGACCCAGCTAGAGTGGAGAAGGAAGAAAAGGCAGAGGAAGGTACTCCAACTTCCAAGAGAGGCGAGCCGACGAGGGTCAAGATCTTCGAAGGAGG
Seq C2 exon
GTACAAATCAAACGAGGAGTATATATATGTGCGAGGCCGCGGCCGAGGGAAGTATGTCTGTGAGGAGTGTGGAATTCGCTGCAAGAAACCCAGCATGCTGAAGAAACACATCCGCACCCACACTGACGTCCGACCCTATGTGTGCAGGCACTGTCACTTTGCTTTTAAAACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009341-'5-10,'5-8,6-10=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.796 A=0.933 C2=0.067
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=1.6),PF139121=zf-C2H2_6=WD(100=1.6)
A:
NO
C2:
PF0009621=zf-C2H2=WD(100=38.3),PF0009621=zf-C2H2=PU(52.0=21.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCTGCTTTGTCCCTCCTG
R:
GGGTGCGGATGTGTTTCTTCA
Band lengths:
248-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]