MmuEX6095703 @ mm10
Exon Skipping
Gene
ENSMUSG00000028634 | Hivep3
Description
human immunodeficiency virus type I enhancer binding protein 3 [Source:MGI Symbol;Acc:MGI:106589]
Coordinates
chr4:120093964-120123047:+
Coord C1 exon
chr4:120093964-120099450
Coord A exon
chr4:120103712-120103854
Coord C2 exon
chr4:120122872-120123047
Length
143 bp
Sequences
Splice sites
3' ss Seq
GTCTTTCCCACGGAGTTCAGGTG
3' ss Score
1.14
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
CCCATGGGACAGCCCCAGGCTCAGAAGCTTTGAAGGAATATGCCCAACCATCTAGCAAAGCTCACCGAAGAGGTCTGCCTCCAATGAGTGTAAAGAAAGAAGATCCAAAGGAACAGACTGACCTCCCTCCCCTGGCACCCCCTAGTTCTCTGCCTCTGTCAGATACTTCCCCTAAACCAGCCAAATTGCAAGAAGGTACGGACTCAAAGAAGGTACTGCAGTTCCCCAGCCTCCACACAACCACTAATGTCAGTTGGTGCTATTTAAACTACATTAAGCCAAATCACATCCAGCATGCAGATAGGAGGTCCTCTGTTTACGCTGGTTGGTGCATAAGTTTGTACAACCCCAACCTTCCAGGGGTTTCCACTAAAGCTGCTTTGTCCCTCCTGCGATCTAAGCAGAAGGTGAGCAAAGAGACATATACCATGGCCACAGCTCCGCATCCTGAGGCAGGAAGGCTGGTTCCATCCAACTCCCGAAAGCCCCGCATGACAGAG
Seq A exon
GTGCACCTCCCGTCGCTGGTTTCCCCAGAGAGCCAGAAAGACCCAGCTAGAGTGGAAAAGGAAGAAAAGCAAGGGAAGGCGGAGGAAGGTACTCCCACTTCCAAGAGAGGCGAGCCGGCGAGGGTCAAGATCTTCGAAGGAGG
Seq C2 exon
GTACAAATCAAACGAAGAGTATATATATGTGCGAGGCCGCGGCCGAGGGAGATATGTTTGTGAGGAATGTGGAATTCGCTGCAAGAAGCCCAGCATGCTGAAGAAACACATCCGCACCCACACTGACGTCCGGCCCTATGTGTGCAAGCACTGTCACTTTGCTTTTAAAACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028634-'24-24,'24-21,34-24=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.826 A=0.938 C2=0.100
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=1.6),PF139121=zf-C2H2_6=WD(100=1.6)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=43.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTACGCTGGTTGGTGCAT
R:
CAAACATATCTCCCTCGGCCG
Band lengths:
247-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types