GgaEX6024886 @ galGal3
Exon Skipping
Gene
ENSGALG00000000635 | HIVEP3
Description
NA
Coordinates
chr23:846780-880393:+
Coord C1 exon
chr23:846780-847898
Coord A exon
chr23:851692-851837
Coord C2 exon
chr23:880218-880393
Length
146 bp
Sequences
Splice sites
3' ss Seq
TTGCTCTTTTGGGGAGATAGGTT
3' ss Score
-0.15
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
CCCGGTCCGGTTCTCCAAGCTTTGAGGCGCTGGAGGAGTATCAGCAGCCAGCTGGCAAGCAGCCCCTTGGCAAGGCACCTTTACAAAGCGTGAAGAAAGAAGACTCCAAAGAGCCAGTGGAGCAGCCTCCACCAAGCCCTCCAAGCCCTGCACCTCTGTCCGAGGTCCCTTCAAGTGCAATGAAGTCTCGAGAAGGTACGGATATGAAGAAGGTACTTCAGTTCCCCAGTCTCCACACAACCACTAATGTCAGTTGGTGCTATTTAAACTACATAAAGCCAAATCACATCCAGCAAGTCGACCGGCGGTCTTCAGTGTATGCCAGCTGGTGTATTAGCTTGTATAACCCCAACCTTCCGGGTATATCCACTAAAGTCGCCCTGTCCCTCCTGAGGTCCAAGCAGAAGGTGAGCAGGGAAACCTACACCATGGCTACTGCTCCACGGCCAGAGGCAGGCAGGCTTGTCCCGTCCAGCTCCAGGAAGCCCAAAATGACAGAG
Seq A exon
GTTCATTTGCCTTCGCTCCTTTCTAATGAAGGTCGAAAAGAAATAACTAGAGCTGAGAAGGAAGAGGATAAAAGAGGAAAACCAGAAGAAGAGGCTGTTGTAACCAAAAGAGGGGAGCCAGTCAGGATCAAGATCTTTGAAGGAGG
Seq C2 exon
GTACAAATCAAACGAAGAGTATGTGTATGTGCGAGGCCGTGGAAGAGGGAAGTATGTATGTGAGGAGTGTGGAATTCGCTGCAAGAAACCCAGCATGCTGAAGAAACACTTTCGCACGCACACAGACGTCAGGCCATATGTCTGCAAGTACTGTAACTTTGCTTTTAAAACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000635-'1-4,'1-0,2-4=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.555 A=0.571 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF065247=NOA36=PU(38.2=96.7),PF053276=RRN3=PU(18.2=48.3),PF134651=zf-H2C2_2=WD(100=43.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGTCCAAGCAGAAGGTGA
R:
GCAGACATATGGCCTGACGTC
Band lengths:
255-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]